BLASTP 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN
         (250 letters)

Database: data/swissprot
           82,258 sequences; 29,652,561 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN                   514  e-146
gi|123932|sp|P19922|HYIN_BRAJA INDOLEACETAMIDE HYDROLASE (IAH) ...    34  0.29
gi|137670|sp|P06422|VE2_HPV08 REGULATORY PROTEIN E2                   32  0.86
gi|5921693|sp|Q05152|CCAB_RABIT VOLTAGE-DEPENDENT N-TYPE CALCIU...    32  1.5
gi|121952|sp|P02256|H1_PARAN HISTONE H1, GONADAL                      31  2.5
gi|3915729|sp|P51592|HYDP_DROME HYPERPLASTIC DISCS PROTEIN (HYD...    31  3.3
gi|124141|sp|P08392|ICP4_HSV11 TRANS-ACTING TRANSCRIPTIONAL PRO...    31  3.3
gi|462182|sp|P33438|GLT_DROME GLUTACTIN PRECURSOR                     31  3.3
gi|1708851|sp|P55268|LMB2_HUMAN LAMININ BETA-2 CHAIN PRECURSOR ...    30  4.3
gi|731294|sp|P39713|YAG1_YEAST HYPOTHETICAL ZINC-TYPE ALCOHOL D...    30  4.3
gi|2495137|sp|Q24704|H1_DROVI HISTONE H1                              29  7.5
gi|6226905|sp|Q59567|TOP1_MYCTU DNA TOPOISOMERASE I (OMEGA-PROT...    29  9.8
gi|6093970|sp|Q61085|RHOP_MOUSE GTP-RHO BINDING PROTEIN 1 (RHOP...    29  9.8
gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT...    29  9.8
gi|547963|sp|Q01989|MYS9_DROME MYOSIN HEAVY CHAIN 95F (95F MHC)       29  9.8

QUERY 1    MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
0     1    MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60
6011       ------------------------------------------------------------
42735      ------------------------------------------------------------
14903      ------------------------------------------------------------
36499      ------------------------------------------------------------
76818      ------------------------------------------------------------
36850      ------------------------------------------------------------
14245      ------------------------------------------------------------
57583      ------------------------------------------------------------
47667 228  -----------------------------------------------------ELAEKMG 234
59981      ------------------------------------------------------------
72095      ------------------------------------------------------------
58685      ------------------------------------------------------------
23110      ------------------------------------------------------------
14284      ------------------------------------------------------------

QUERY 61   GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
0     61   GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120
6011       ------------------------------------------------------------
42735      ------------------------------------------------------------
14903 822  ---------------------------------------------------PGRDAPRGP 830
36499      ------------------------------------------------------------
76818      ------------------------------------------------------------
36850 59   -----------------------------------------------------RRDGRAP 65
14245 644  -------------------------------------EYVRAQEARQQEFIREREQRRRE 666
57583 1671 --------------------------------------KLKRAGNSLAASTAEETAGSAQ 1692
47667 235  ARVYDPTAHAAKESIDYLRSIADGGDG--------------------------------- 261
59981      ------------------------------------------------------------
72095 842  -----------------------------------------------------KRRGRQS 848
58685      ------------------------------------------------------------
23110 19   ---------------------------------------------------------RKP 21
14284      ------------------------------------------------------------

QUERY 121  AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
0     121  AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160
6011       ------------------------------------------------------------
42735 258  --------------------------------------------PQKEQRRS-------- 265
14903 831  PGGKSRPDGSEAPEGADPPRRHHRHRDK------DK---AP---ATVPSAGE-------- 870
36499 147  AAAKRKAALAKKKAAAAKRKAAAKAKKA------KK---PK---KKAAKKAK-------- 186
76818      ------------------------------------------------------------
36850 66   AAGTDAGEDAGDAVSPRQLALLASMVEE------AVRTIPT---PDPAASPP-------- 108
14245 667  QQLRDQQRYPQQ----EPREQQDERIRQ------QR---EQ---EERLRQQR-------- 702
57583 1693 GRAQEAEQLLRGPLGDQYQTVKALAERK------AQ---GVLAAQARAEQLR-------- 1735
47667 260  ------------------------------------------------------------ 261
59981 124  ---------------AKPKA--SAVEKK------TK---KV---NASAARAT-------- 146
72095 849  ASAPPLRELGTDPASGKPMVI--KDGRF------GP---YV---TDGETNAS-------- 886
58685      ------------------------------------------------------------
23110 22   GGDGDKKDRKFEPSAAPSR--VGRKQRKQKGPEAAA---RL---PNVAPLSKCRLRLLKL 73
14284 936  ---------------------------R------AA---KE---AEEQRQRE-------- 948

QUERY 161  Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
0     161  Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204
6011  12   -----QRRDLRGRDRRS---ASRTDARR----QS--AAERGCRRSQRG-SAE-GCACGR- 54
42735 266  R----SRHRT-RSRSRS---LSRVRAVG----ST--TVSRSRSSSLTK-AVR-PRSRSR- 308
14903 871  Q----DRAEALRAEGGE---LGPREERG----RP----RRSRSKEAPG-APEVRSDRGRG 914
36499 187  K----PAKKSPKKAKKP---AKKSPKKK----KA--KRSPKKAKKAAG-KRK-PAAKKA- 230
76818 1967 -----DKQDSISGRINN---LSPMTESY----DT--DDELANLEEFNA-DVQ-MSASSM- 2009
36850 109  RTPAFRADDDDGDEYDD---AADAAGDR----AP--ARGREREAPLRGAYPD-PTDRLS- 157
14245 703  E----QE-----------------ERLR----QQRELEERIRQQQERE-QYE-REQQER- 734
57583 1736 D----EARDLLQAAQDK---LQRLQELE----GT--YEENERA----------------- 1765
47667 260  ------------------------------------------------------------ 261
59981 147  K----SKSSTSTTKKAA---GAADKKLS----KS--AAAKKNVEKKKA-DKE-KAKDAK- 190
72095 887  L----RKGDDVASITD--------ERAA----EL--LADRRARGPAKR-PAR-KAARKV- 925
58685 584  ----------------------------------------------------------R- 584
23110 74   E----RVKDYLLMEEEF---VAAQERLRPTEDKT--EEDRSKVDDLRG------------ 112
14284 949  E----IENKRLKAEMETRRKAAEAQRLR----QE--EEDRRAALALQE-QLE-KEAKDD- 995

QUERY 205  --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
0     205  --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250
6011  55   --QTGPRAA-----RSACCTACPSRSRRMSTT------EGRPNFN---GVPANKDF- 94
42735 309  --SRGRATATSRRRAGRGS---PRRRRSTSRSPSTNTFKRSQRGG---GRRGR---- 353
14903 915  PCPEGGRRHHRRGSPEEAAEREPRRHRAHRHG------PDPGKEGPASGTRGER--- 962
36499 231  --RRSPRKAGKRRSPKK---------------------------------------- 245
76818 2010 --PSGSQGTRRH------AFFARSESTLTLGC------SAPEGF------------- 2039
36850 158  --PRPPAQPPRRRRHGR---------------------------------------- 172
14245 735  --EQREREELERQQRER---------------------------------------- 749
57583 1764 --------------------------------------------------------- 1765
47667 260  --------------------------------------------------------- 261
59981 191  --KTGTIKAKPTTAKAKSSATKPKTPKPKTTS------AKPKK-------------- 225
72095 926  --PA--KKAAKR--------------------------------------------- 933
58685 585  --GTGPRRAALLWNQRECGFETP-MPTRTRP-------------------------- 612
23110 111  --------------------------------------------------------- 112
14284 996  --AKYRQQLEQERRDHELALRLANESNGQVED------SPP---------------- 1028
  Database: data/swissprot
    Posted date:  Feb 2, 2000  9:39 AM
  Number of letters in database: 29,652,561
  Number of sequences in database:  82,258
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14679054
Number of Sequences: 82258
Number of extensions: 599117
Number of successful extensions: 1508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 15
length of query: 250
length of database: 29,652,561
effective HSP length: 51
effective length of query: 199
effective length of database: 25,457,403
effective search space: 5066023197
effective search space used: 5066023197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 63 (29.0 bits)
