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<TITLE>BLAST Search Results </TITLE>
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<A HREF="http://www.ncbi.nlm.nih.gov/BLAST/blast_form.map"> <IMG SRC="http://www.ncbi.nlm.nih.gov/BLAST/blast_results.gif" BORDER=0 ISMAP></A>
<BR><BR><PRE>
<b>TBLASTX 2.0.10 [Aug-26-1999]</b>


<b><a href="http://www.ncbi.nlm.nih.gov/htbin-
post/Entrez/query?uid=9254694&form=6&db=m&Dopt=r">Reference</a>:</b>
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Sch&auml;ffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
<p>
<b>Query=</b> gi|1348853|gb|G26621.1|G26621 human STS STS_D12006.
         (615 letters)

<b>Database:</b> Non-redundant Database of GenBank STS Division
           89,526 sequences; 32,906,604 total letters

<p> <p>If you have any problems or questions with the results of this search <br>please refer to the <b><a href=http://www.ncbi.nlm.nih.gov/BLAST/blast_FAQs.html>BLAST FAQs</a></b><br><p>
<FORM NAME="BLASTFORM">
</PRE>
<CENTER>
<H3><a href="/BLAST/newoptions.html#graphical-overview"> Distribution of 12 Blast Hits on the Query Sequence</a></H3>
<input name=defline size=80 value="Mouse-over to show defline and scores. Click to show alignments">
</CENTER>
<map name=img_map>
<area shape=rect coords=69,88,524,93 href="#1348853" ONMOUSEOVER='document.BLASTFORM.defline.value="G26621  human STS STS_D12006.  gi|1396339|gb|G27620|G27620 huma..S= 398 E=2e-111"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=69,95,420,100 href="#1348016" ONMOUSEOVER='document.BLASTFORM.defline.value="G25784  human STS EST47998...S= 302 E=2e-82"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=224,102,284,107 href="#3403105" ONMOUSEOVER='document.BLASTFORM.defline.value="G41148  Z7324 Zebrafish AB Danio rerio STS genomic..S=30.8 E=1.1"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=261,109,302,114 href="#1234967" ONMOUSEOVER='document.BLASTFORM.defline.value="Z53521  H.sapiens (D22S1166) DNA segment containing (CA) repeat; c..S=30.4 E=1.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=94,102,146,107 href="#4185670" ONMOUSEOVER='document.BLASTFORM.defline.value="G42865  Xq3845 KWOK Homo sapiens STS genomic, sequence tagged site..S=29.9 E=2.1"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=71,109,146,114 href="#4757419" ONMOUSEOVER='document.BLASTFORM.defline.value="G49246  stbK116F5_30376 chromosome 22 genomic clone Homo sapiens S..S=29.5 E=2.9"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=79,116,140,121 href="#6120694" ONMOUSEOVER='document.BLASTFORM.defline.value="G55375  SHGC-100697 Human Homo sapiens STS genomic, sequence tagge..S=28.6 E=5.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=218,116,270,121 href="#5225124" ONMOUSEOVER='document.BLASTFORM.defline.value="G53947  SHGC-85304 Human Homo sapiens STS genomic, sequence tagged..S=28.6 E=5.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=86,123,158,128 href="#1311530" ONMOUSEOVER='document.BLASTFORM.defline.value="L77996  Human chromosome X STS sWXD945, single read...S=28.1 E=7.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=120,130,153,135 href="#2734624" ONMOUSEOVER='document.BLASTFORM.defline.value="G36957  SHGC-56642 Human Homo sapiens STS cDNA..S=28.1 E=7.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=198,123,281,128 href="#2226478" ONMOUSEOVER='document.BLASTFORM.defline.value="G33174  human STS SHGC-6097 clone pG-2470..S=28.1 E=7.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
<area shape=rect coords=220,130,277,135 href="#4631518" ONMOUSEOVER='document.BLASTFORM.defline.value="AU046883  Rattus norvegicus, OTSUKA clone, 085f03, microsatellite ..S=28.1 E=7.5"' ONMOUSEOUT='document.BLASTFORM.defline.value="Mouse-over to show defline and scores. Click to show alignments"' >
</map>
<CENTER>
<IMG WIDTH=529 HEIGHT=137 USEMAP=#img_map BORDER=1 SRC="nph-getgif.cgi?miles&207891705328584.gif" ISMAP></CENTER>
<HR>
<PRE>
<PRE>

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01348853&dopt=GenBank">gb|G26621|G26621</a>  human STS STS_D12006. >gi|1396339|gb|G...   <a href = #1348853>398</a>  e-111  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01348016&dopt=GenBank">gb|G25784|G25784</a>  human STS EST47998.                         <a href = #1348016>302</a>  2e-82  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=03403105&dopt=GenBank">gb|G41148|G41148</a>  Z7324 Zebrafish AB Danio rerio STS gen...   <a href = #3403105> 31</a>  1.1  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01234967&dopt=GenBank">emb|Z53521|HSB316XA9</a>  H.sapiens (D22S1166) DNA segment c...   <a href = #1234967> 30</a>  1.5  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=04185670&dopt=GenBank">gb|G42865.1|G42865</a>  Xq3845 KWOK Homo sapiens STS genomic...   <a href = #4185670> 30</a>  2.1  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=04757419&dopt=GenBank">gb|G49246.1|G49246</a>  stbK116F5_30376 chromosome 22 genomi...   <a href = #4757419> 29</a>  2.9  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=05225124&dopt=GenBank">gb|G53947.1|G53947</a>  SHGC-85304 Human Homo sapiens STS ge...   <a href = #5225124> 29</a>  5.5  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=06120694&dopt=GenBank">gb|G55375.1|G55375</a>  SHGC-100697 Human Homo sapiens STS g...   <a href = #6120694> 29</a>  5.5  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=02226478&dopt=GenBank">gb|G33174|G33174</a>  human STS SHGC-6097 clone pG-2470           <a href = #2226478> 28</a>  7.5  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01311530&dopt=GenBank">gb|L77996|HUMSWX945</a>  Human chromosome X STS sWXD945, sin...   <a href = #1311530> 28</a>  7.5  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=04631518&dopt=GenBank">dbj|AU046883.1|AU046883</a>  Rattus norvegicus, OTSUKA clone...   <a href = #4631518> 28</a>  7.5  1
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=02734624&dopt=GenBank">gb|G36957|G36957</a>  SHGC-56642 Human Homo sapiens STS cDNA      <a href = #2734624> 28</a>  7.5  1

<PRE>
<a name = 1348853> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01348853&dopt=GenBank">gb|G26621|G26621</a> human STS STS_D12006. >gi|1396339|gb|G27620|G27620 human STS
           SHGC-32705.
           Length = 615
           
 Score =  367 bits (796), Expect = e-102
 Identities = 200/200 (100%), Positives = 200/200 (100%)
 Frame = +2 / +2

                                                                       
Query: 2   IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
           IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA
Sbjct: 2   IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181

                                                                       
Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
           HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYE AL *
Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361

                                                                       
Query: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXXGXRXXXLX 541
           S*NGFPKLVTHGPG V L L GLSSFQEF STVANPWG *         F  G R   L 
Sbjct: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWGX*XXXXXXXXXFXXGXRXXXLX 541

                               
Query: 542 XXXGGCXXVXXVXXXWXXXF 601
              GGC  V  V   W   F
Sbjct: 542 XXXGGCXXVXXVXXXWXXXF 601
</PRE>


<PRE>
 Score =  340 bits (736), Expect = 9e-94
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3 / +3

                                                                       
Query: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
           SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR
Sbjct: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182

                                                                       
Query: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIMXQHSXN 362
           IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIM QHS N
Sbjct: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIMXQHSXN 362

                                                                       
Query: 363 PKMDFQSWLHMALXXSY*XXXGFLXFRSXGQRWQIXGVXXWXGXLXXXXFXGAXGGXGXX 542
           PKMDFQSWLHMAL  SY*   GFL FRS GQRWQI GV  W G L    F GA GG G  
Sbjct: 363 PKMDFQSWLHMALXXSY*XXXGFLXFRSXGQRWQIXGVXXWXGXLXXXXFXGAXGGXGXX 542

                                   
Query: 543 SXXVGAXGXXXFXXXGXXXXXXXW 614
           S  VGA G   F   G       W
Sbjct: 543 SXXVGAXGXXXFXXXGXXXXXXXW 614
</PRE>


<PRE>
 Score =  350 bits (759), Expect = 6e-97
 Identities = 195/205 (95%), Positives = 195/205 (95%)
 Frame = +1 / +1

                                                                       
Query: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
           DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS
Sbjct: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180

                                                                       
Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
           A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL* ST V
Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360

                                                                       
Query: 361 ILKWISKAGYTWPWXXXIXFXXAFFXXXXXXXXXXXXXXLXGXVX*XXXXSXGPXXXXVX 540
           ILKWISKAGYTWPW   I F  AFF              L G V *    S GP    V 
Sbjct: 361 ILKWISKAGYTWPWXXXIXFXXAFFXSGVXVNGGKSXGXLXGXVX*XXXXSXGPXXXXVX 540

                                    
Query: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
            P GWV  G F F      F   LG
Sbjct: 541 XPXGWVXXGXFXFXXXXXXFXXXLG 615
</PRE>


<PRE>
 Score =  398 bits (864), Expect = e-111
 Identities = 205/205 (100%), Positives = 205/205 (100%)
 Frame = -1 / -1

                                                                       
Query: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFATVDXNS*X 436
           PK   K      KTK T  HPP W  N   LWP      L N   * P GFATVD NS* 
Sbjct: 615 PKXXXKXXXXXXKTKXTXXHPPXWXXNXXXLWPXXXXXXLXNXXX*XPXGFATVDXNS*X 436

                                                                       
Query: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*A 256
           EESP K N T PGPCVTSFGNPF*DY SA S*CCIFFLPGFGVPRLFVHQNNGCKGEN*A
Sbjct: 435 EESPXKXNXTXPGPCVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*A 256

                                                                       
Query: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E 76
           VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E
Sbjct: 255 VVRSC*EDAVKQVT*KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*E 76

                                    
Query: 75  LCIHSHFSCQSGQNEESHEWRGILI 1
           LCIHSHFSCQSGQNEESHEWRGILI
Sbjct: 75  LCIHSHFSCQSGQNEESHEWRGILI 1
</PRE>


<PRE>
 Score =  390 bits (846), Expect = e-109
 Identities = 196/196 (100%), Positives = 196/196 (100%)
 Frame = -3 / -3

                                                                       
Query: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKXRKPX*XQX 410
           P   N  NP APT    *P PP AP K      P  L TP ICHR*PKLLK RKP * Q 
Sbjct: 589 PXXXNXXNPXAPTXXXX*PXPPXAPXKXXXXXXPXXLXTPXICHR*PKLLKXRKPX*XQX 410

                                                                       
Query: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC 230
           D  RAMCNQLWKSILGL EC FIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC
Sbjct: 409 DXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VICPPEQWL*RRKLSSGQKLLRRC 230

                                                                       
Query: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL 50
           GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL
Sbjct: 229 GKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWLKAPFWPFLFLLRALHTFPLFL 50

                           
Query: 49  SKWTK*RVS*VEGHSD 2
           SKWTK*RVS*VEGHSD
Sbjct: 49  SKWTK*RVS*VEGHSD 2
</PRE>


<PRE>
 Score =  281 bits (608), Expect = 4e-76
 Identities = 122/122 (100%), Positives = 122/122 (100%)
 Frame = -2 / -2

                                                                       
Query: 368 FRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NRLHKKQCWFEI 189
           FRIT*VL HNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NRLHKKQCWFEI
Sbjct: 368 FRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NRLHKKQCWFEI 189

                                                                       
Query: 188 TYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVDKMKSLMSGGA 9
           TYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVDKMKSLMSGGA
Sbjct: 188 TYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVDKMKSLMSGGA 9

             
Query: 8   F* 3
           F*
Sbjct: 8   F* 3
</PRE>


<PRE>
<a name = 1348016> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01348016&dopt=GenBank">gb|G25784|G25784</a> human STS EST47998.
           Length = 617
           
 Score =  273 bits (590), Expect = 1e-73
 Identities = 121/133 (90%), Positives = 121/133 (90%)
 Frame = +1 / +1

                                                                       
Query: 1   DQNAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKCTNAKSLDKS 180
           DQ APPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTK  NAKSLDKS
Sbjct: 1   DQXAPPLMRLFILSTLTGKVGMYAELSKETKKAKTVPSATSSELALTWTKXXNAKSLDKS 180

                                                                       
Query: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*XSTXV 360
           A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL* ST  
Sbjct: 181 A*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVLVDK*PRYSKSWQEKYTAL*NSTQ* 360

                        
Query: 361 ILKWISKAGYTWP 399
                SKAGYT P
Sbjct: 361 S*NGFSKAGYTXP 399
</PRE>


<PRE>
 Score =  289 bits (626), Expect = 1e-78
 Identities = 129/158 (81%), Positives = 131/158 (82%)
 Frame = +2 / +2

                                                                       
Query: 2   IRMPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLNALMQNPLTKA 181
           IR PLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGL  LMQNPLTKA
Sbjct: 2   IRXPLHS*DSSFCPL*QEKWECMQSSQKKQKRPKRCLQPHPLNWP*LGLXPLMQNPLTKA 181

                                                                       
Query: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFSPLQPLFWWTNNLGTPNPGRKNIQHYEXALX* 361
           HRLFQTSIVFYVTCFTASSQQLLTTAQF PLQPLFWWTNNLGTPNPGRKNIQHYE AL  
Sbjct: 182 HRLFQTSIVFYVTCFTASSQQLLTTAQFFPLQPLFWWTNNLGTPNPGRKNIQHYETALSN 361

                                                 
Query: 362 S*NGFPKLVTHGPGXVXLXLXGLSSFQEFXSTVANPWG 475
               FPKLVTH    +         +Q F ST ANPWG
Sbjct: 362 PKMDFPKLVTHXLQSLI*I*KAFLIYQGFRSTXANPWG 475
</PRE>


<PRE>
 Score =  248 bits (535), Expect = 5e-66
 Identities = 128/157 (81%), Positives = 129/157 (81%)
 Frame = +3 / +3

                                                                       
Query: 3   SECPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*MH*CKIP*QKR 182
           S CPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*  *CKIP*QKR
Sbjct: 3   SXCPSTHETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHIL*IGPDLD*XX*CKIP*QKR 182

                                                                       
Query: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFLLYSHCSGGQIT*VLQILAGKIYSIMXQHSXN 362
           IGYFKPALFFM*PVLPHLLSSF*PLLNF LYSHCSGGQIT*VLQILAGKIYSIM QHS  
Sbjct: 183 IGYFKPALFFM*PVLPHLLSSF*PLLNFFLYSHCSGGQIT*VLQILAGKIYSIMKQHSVI 362

                                                
Query: 363 PKMDFQSWLHMALXXSY*XXXGFLXFRSXGQRWQIXG 473
            K  FQSWLHM     +     F   R  GQR Q  G
Sbjct: 363 LKWIFQSWLHMXCKVLFKFKRPFSFTRGLGQRXQTPG 473
</PRE>


<PRE>
 Score =  302 bits (653), Expect = 2e-82
 Identities = 128/157 (81%), Positives = 132/157 (83%)
 Frame = -3 / -2

                                                                       
Query: 472 PXICHR*PKLLKXRKPX*XQXDXXRAMCNQLWKSILGLXECXFIMLYIFPARIWST*VIC 293
           P +C R*PK L   K         + MCNQLWK    + EC FIMLYIFPARIWST*VIC
Sbjct: 472 PGVCXR*PKPLVNEKGLLNLNKTLQXMCNQLWKIHFRITECCFIMLYIFPARIWST*VIC 293

                                                                       
Query: 292 PPEQWL*RRKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*CI*SKSGPIQRMWL 113
           PPEQWL*R+KLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*  *SKSGPIQRMWL
Sbjct: 292 PPEQWL*RKKLSSGQKLLRRCGKTGYIKNNAGLK*PMRFCQGILH*XX*SKSGPIQRMWL 113

                                                
Query: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHSD 2
           KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEG SD
Sbjct: 112 KAPFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGXSD 2
</PRE>


<PRE>
 Score =  276 bits (598), Expect = 1e-74
 Identities = 122/130 (93%), Positives = 122/130 (93%)
 Frame = -2 / -1

                                                                       
Query: 398 GHV*PALEIHFRIT*VLXHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR 219
           GHV*PALE  F   *VL HNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR
Sbjct: 398 GHV*PALENPF*DY*VLFHNAVYFSCQDLEYLGYLSTRTMAVKEKIEQWSEAAEKMR*NR 219

                                                                       
Query: 218 LHKKQCWFEITYALLSRDFALVHLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD 39
           LHKKQCWFEITYALLSRDFAL  LVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD
Sbjct: 218 LHKKQCWFEITYALLSRDFALXXLVQVRANSEDVAEGTVLAFFVSFESSAYIPTFPVKVD 39

                     
Query: 38  KMKSLMSGGA 9
           KMKSLMSGGA
Sbjct: 38  KMKSLMSGGA 9
</PRE>


<PRE>
 Score =  290 bits (628), Expect = 7e-79
 Identities = 119/131 (90%), Positives = 120/131 (90%)
 Frame = -1 / -3

                                                                       
Query: 393 CVTSFGNPF*DYXSAXS*CCIFFLPGFGVPRLFVHQNNGCKGEN*AVVRSC*EDAVKQVT 214
           CVTSFG       SA S*CCIFFLPGFGVPRLFVHQNNGCKG+N*AVVRSC*EDAVKQVT
Sbjct: 393 CVTSFGKSILGLLSAVS*CCIFFLPGFGVPRLFVHQNNGCKGKN*AVVRSC*EDAVKQVT 214

                                                                       
Query: 213 *KTMLV*NNLCAFVKGFCISAFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN 34
           *KTMLV*NNLCAFVKGFCI  FSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN
Sbjct: 213 *KTMLV*NNLCAFVKGFCIXGFSPSQGQFRGCG*RHRFGLFCFF*ELCIHSHFSCQSGQN 34

                      
Query: 33  EESHEWRGILI 1
           EESHEWRG LI
Sbjct: 33  EESHEWRGXLI 1
</PRE>


<PRE>
<a name = 3403105> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=03403105&dopt=GenBank">gb|G41148|G41148</a> Z7324 Zebrafish AB Danio rerio STS genomic
           Length = 351
           
 Score = 30.8 bits (61), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = +1 / +2

                                      
Query: 211 LCNLFYRIFSAASDHCSIFSFTAIVLV 291
           L NL +R+F++  DHCS+  F   V++
Sbjct: 2   LTNLIFRLFTSK*DHCSLKQFNNKVVI 82
</PRE>


<PRE>
<a name = 1234967> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01234967&dopt=GenBank">emb|Z53521|HSB316XA9</a> H.sapiens (D22S1166) DNA segment containing (CA) repeat; clone
           AFMb316xa9; single read, sequence tagged site [Homo
           sapiens]
           Length = 345
           
 Score = 30.4 bits (60), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = -3 / +1

                              
Query: 316 IWST*VICPPEQWL*RRKL 260
           +W T  +CPP  W *RR+L
Sbjct: 226 LWGTAPLCPPVPWA*RRQL 282
</PRE>


<PRE>
<a name = 4185670> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=04185670&dopt=GenBank">gb|G42865.1|G42865</a> Xq3845 KWOK Homo sapiens STS genomic, sequence tagged site
           Length = 1200
           
 Score = 29.9 bits (59), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -3 / -2

                                   
Query: 106 PFWPFLFLLRALHTFPLFLSKWTK 35
           P WP + LL  +H+FP  +  W K
Sbjct: 716 PEWPSINLLPGMHSFPRVIPCWEK 645
</PRE>


<PRE>
<a name = 4757419> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=04757419&dopt=GenBank">gb|G49246.1|G49246</a> stbK116F5_30376 chromosome 22 genomic clone Homo sapiens STS
           genomic clone 116F5, sequence tagged site
           Length = 375
           
 Score = 29.5 bits (58), Expect = 2.9
 Identities = 15/34 (44%), Positives = 17/34 (49%)
 Frame = -3 / -2

                                             
Query: 106 PFWPFLFLLRALHTFPLFLSKWTK*RVS*VEGHS 5
           P W   FLLR LHT P    K+    V+  EG S
Sbjct: 176 PGWTLRFLLRGLHTPPKAAEKFPSQGVAEPEGFS 75
</PRE>


<PRE>
<a name = 5225124> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=05225124&dopt=GenBank">gb|G53947.1|G53947</a> SHGC-85304 Human Homo sapiens STS genomic, sequence tagged site
           Length = 444
           
 Score = 28.6 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = +1 / -2

                                   
Query: 202 HCFLCNLFYRIFSAASDHCSIFSF 273
           HC L ++F RIF    +  S+F+F
Sbjct: 443 HCHLSSVFCRIFFTLEESLSLFAF 372
</PRE>


<PRE>
<a name = 6120694> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=06120694&dopt=GenBank">gb|G55375.1|G55375</a> SHGC-100697 Human Homo sapiens STS genomic, sequence tagged site
           Length = 460
           
 Score = 28.6 bits (56), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3 / +1

                                       
Query: 15  STHETLHFVHFDRKSGNVCRALKRNKKG 98
           +TH    F+H  +K  N+C  +  N++G
Sbjct: 82  TTHSMTVFLHVKKKLSNICIYMPENREG 165
</PRE>


<PRE>
<a name = 2226478> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=02226478&dopt=GenBank">gb|G33174|G33174</a> human STS SHGC-6097 clone pG-2470
           Length = 299
           
 Score = 28.1 bits (55), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = +1 / +2

                                                 
Query: 175 KSA*VISNQHCFLCNLFYRIFSAASDHCSIFSFTAIVL 288
           +SA +I   HC    +   +FS ASD  S    T ++L
Sbjct: 119 QSAWIIGMSHCAWAVIHCLLFSTASDEKSAVDLTGVLL 232
</PRE>


<PRE>
<a name = 1311530> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=01311530&dopt=GenBank">gb|L77996|HUMSWX945</a> Human chromosome X STS sWXD945, single read.
           Length = 196
           
 Score = 28.1 bits (55), Expect = 7.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3 / -2

                                            
Query: 24  ETLHFVHFDRKSGNVCRALKRNKKGQNGAFSHI 122
           E +H+V F +  G +  + ++ ++ QN   SH+
Sbjct: 141 EKIHYVLF*KNCGKIMTS*RQRQENQNNLLSHV 43
</PRE>


<PRE>
<a name = 4631518> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=04631518&dopt=GenBank">dbj|AU046883.1|AU046883</a> Rattus norvegicus, OTSUKA clone, 085f03, microsatellite sequence,
           sequence tagged site
           Length = 351
           
 Score = 28.1 bits (55), Expect = 7.5
 Identities = 8/26 (30%), Positives = 15/26 (56%)
 Frame = +1 / +3

                                     
Query: 205 CFLCNLFYRIFSAASDHCSIFSFTAI 282
           CF+C L  +I+  A +   +  FT++
Sbjct: 249 CFICKLVLKIYLRAEERTQLIEFTSL 326
</PRE>


<PRE>
<a name = 2734624> </a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=02734624&dopt=GenBank">gb|G36957|G36957</a> SHGC-56642 Human Homo sapiens STS cDNA
           Length = 466
           
 Score = 28.1 bits (55), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = -3 / -3

                          
Query: 115 LKAPFWPFLFLLRAL 71
           L  PFW FLF L+AL
Sbjct: 242 LSVPFWKFLFYLQAL 198
</PRE>



<PRE>
  Database: Non-redundant Database of GenBank STS Division
    Posted date:  Dec 28, 1999  3:49 PM
  Number of letters in database: 32,906,604
  Number of sequences in database:  89,526
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 1st pass: 41589935, 2nd pass: 9765
Number of Sequences: 1st pass: 89526, 2nd pass: 84
Number of extensions: 1st pass: 501394, 2nd pass: 6747
Number of successful extensions: 1st pass: 14, 2nd pass: 49
Number of sequences better than 10.0: 20
length of query: 205
length of database: 10,968,868
effective HSP length: 46
effective length of query: 158
effective length of database: 6,850,672
effective search space: 1082406176
effective search space used: 1082406176
frameshift window, decay const: 50,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 52 (26.7 bits)

</PRE>

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